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KRA Penalties in 2026: Every Late Filing and Payment Fine in One Table

PenaltiesPublished September 2026·7 min read·By the Probity Finance team

Kenyan tax penalties are automatic. There is no warning letter, no grace period and no discretion at the point they are applied — iTax computes them the moment a deadline passes. This is the full price list for 2026, in one place, so you know exactly what a missed deadline costs before it happens.

Late filing penalties

ReturnDeadlineLate filing penalty
Individual income tax30 June (30 April from 2027)Higher of 5% of tax due or KES 2,000
Company income tax6 months after year endHigher of 5% of tax due or KES 20,000
VAT20th of following monthHigher of 5% of tax due or KES 10,000
PAYE (employer)9th of following monthHigher of 25% of tax due or KES 10,000
Turnover tax20th of following monthKES 1,000 per month

Note the PAYE figure: 25%, not 5%. A KES 200,000 payroll tax filed late starts at a KES 50,000 penalty. And nil returns count — a dormant VAT obligation that never files still collects KES 10,000 per missed month.

Late payment: the penalty that keeps growing

Filing on time but paying late has its own price: a late payment penalty of 5% of the unpaid tax, then interest at 1% per month for as long as the balance stands. Interest is where old debts balloon — a KES 100,000 liability ignored for two years grows by roughly a quarter through interest alone, before the original penalty.

The payroll levies

DeductionDeadlineLate payment penalty
Affordable Housing Levy (1.5% + 1.5%)9th of following month3% of the unpaid amount per month
NSSF9th of following month5% of the unpaid contributions per month
SHIF (2.75%)9th of following month2% of the unpaid amount per month

These compound monthly, which makes them among the most expensive debts a business can carry — an unremitted NSSF balance grows 5% every single month it stands.

The special cases that catch businesses

Already carrying penalties?

Penalties and interest are not always the end of the story. KRA entertains waiver applications with genuine grounds and evidence, disputes where the underlying figure is wrong, and payment plans for confirmed balances. What never works is silence — the 1% monthly interest never sleeps.

The cheapest tax strategy in Kenya

Every figure in this article is avoidable with the same three habits: a compliance calendar on the wall — here is ours — returns filed a few days early rather than on deadline day, and payment made when the return is filed, not after. Compliance is boring. So is not paying 25%.

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Our retainers cover every deadline in this article — computed, filed and paid on time, every month.

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